dc-ml-emea-ar/main.py

import os
import json
import pandas as pd
from glob import glob
from tqdm import tqdm
import time
from utils.logger import logger
from utils.pdf_download import download_pdf_from_documents_warehouse
from utils.sql_query_util import query_document_fund_mapping
from core.page_filter import FilterPages
from core.data_extraction import DataExtraction
from core.data_mapping import DataMapping
from core.metrics import Metrics


class EMEA_AR_Parsing:
    def __init__(
        self,
        doc_id: str,
        pdf_folder: str = r"/data/emea_ar/pdf/",
        output_extract_data_folder: str = r"/data/emea_ar/output/extract_data/docs/",
        output_mapping_data_folder: str = r"/data/emea_ar/output/mapping_data/docs/",
        extract_way: str = "text",
    ) -> None:
        self.doc_id = doc_id
        self.pdf_folder = pdf_folder
        os.makedirs(self.pdf_folder, exist_ok=True)
        self.pdf_file = self.download_pdf()
        self.document_mapping_info_df = query_document_fund_mapping(doc_id, rerun=False)

        if extract_way is None or len(extract_way) == 0:
            extract_way = "text"
        self.extract_way = extract_way
        self.output_extract_image_folder = None
        if self.extract_way == "image":
            self.output_extract_image_folder = (
                r"/data/emea_ar/output/extract_data/images/"
            )
            os.makedirs(self.output_extract_image_folder, exist_ok=True)

        if output_extract_data_folder is None or len(output_extract_data_folder) == 0:
            output_extract_data_folder = r"/data/emea_ar/output/extract_data/docs/"
        if not output_extract_data_folder.endswith("/"):
            output_extract_data_folder = f"{output_extract_data_folder}/"
        if extract_way is not None and len(extract_way) > 0:
            output_extract_data_folder = (
                f"{output_extract_data_folder}by_{extract_way}/"
            )
        self.output_extract_data_folder = output_extract_data_folder
        os.makedirs(self.output_extract_data_folder, exist_ok=True)

        if output_mapping_data_folder is None or len(output_mapping_data_folder) == 0:
            output_mapping_data_folder = r"/data/emea_ar/output/mapping_data/docs/"
        if not output_mapping_data_folder.endswith("/"):
            output_mapping_data_folder = f"{output_mapping_data_folder}/"
        if extract_way is not None and len(extract_way) > 0:
            output_mapping_data_folder = (
                f"{output_mapping_data_folder}by_{extract_way}/"
            )
        self.output_mapping_data_folder = output_mapping_data_folder
        os.makedirs(self.output_mapping_data_folder, exist_ok=True)

        self.filter_pages = FilterPages(
            self.doc_id, self.pdf_file, self.document_mapping_info_df
        )
        self.page_text_dict = self.filter_pages.page_text_dict
        self.datapoint_page_info, self.result_details = self.get_datapoint_page_info()
        self.datapoints = self.get_datapoints_from_datapoint_page_info()

    def download_pdf(self) -> str:
        pdf_file = download_pdf_from_documents_warehouse(self.pdf_folder, self.doc_id)
        return pdf_file

    def get_datapoint_page_info(self) -> tuple:
        datapoint_page_info, result_details = self.filter_pages.start_job()
        return datapoint_page_info, result_details

    def get_datapoints_from_datapoint_page_info(self) -> list:
        datapoints = list(self.datapoint_page_info.keys())
        if "doc_id" in datapoints:
            datapoints.remove("doc_id")
        return datapoints

    def extract_data(
        self,
        re_run: bool = False,
    ) -> list:
        if not re_run:
            output_data_json_folder = os.path.join(
                self.output_extract_data_folder, "json/"
            )
            os.makedirs(output_data_json_folder, exist_ok=True)
            json_file = os.path.join(output_data_json_folder, f"{self.doc_id}.json")
            if os.path.exists(json_file):
                logger.info(
                    f"The document: {self.doc_id} has been parsed, loading data from {json_file}"
                )
                with open(json_file, "r", encoding="utf-8") as f:
                    data_from_gpt = json.load(f)
                return data_from_gpt

        data_extraction = DataExtraction(
            self.doc_id,
            self.pdf_file,
            self.output_extract_data_folder,
            self.page_text_dict,
            self.datapoint_page_info,
            self.datapoints,
            self.document_mapping_info_df,
            extract_way=self.extract_way,
            output_image_folder=self.output_extract_image_folder,
        )
        data_from_gpt = data_extraction.extract_data()
        return data_from_gpt

    def mapping_data(self, data_from_gpt: list, re_run: bool = False) -> list:
        if not re_run:
            output_data_json_folder = os.path.join(
                self.output_mapping_data_folder, "json/"
            )
            os.makedirs(output_data_json_folder, exist_ok=True)
            json_file = os.path.join(output_data_json_folder, f"{self.doc_id}.json")
            if os.path.exists(json_file):
                logger.info(
                    f"The fund/ share of this document: {self.doc_id} has been mapped, loading data from {json_file}"
                )
                with open(json_file, "r", encoding="utf-8") as f:
                    doc_mapping_data = json.load(f)
                return doc_mapping_data
        """
        doc_id,
        datapoints: list,
        raw_document_data_list: list,
        document_mapping_info_df: pd.DataFrame,
        output_data_folder: str,
        """
        data_mapping = DataMapping(
            self.doc_id,
            self.datapoints,
            data_from_gpt,
            self.document_mapping_info_df,
            self.output_mapping_data_folder,
        )
        return data_mapping.mapping_raw_data()


def filter_pages(doc_id: str, pdf_folder: str) -> None:
    logger.info(f"Filter EMEA AR PDF pages for doc_id: {doc_id}")
    emea_ar_parsing = EMEA_AR_Parsing(doc_id, pdf_folder)
    datapoint_page_info, result_details = emea_ar_parsing.get_datapoint_page_info()
    return datapoint_page_info, result_details


def extract_data(
    doc_id: str,
    pdf_folder: str,
    output_data_folder: str,
    extract_way: str = "text",
    re_run: bool = False,
) -> None:
    logger.info(f"Extract EMEA AR data for doc_id: {doc_id}")
    emea_ar_parsing = EMEA_AR_Parsing(
        doc_id,
        pdf_folder,
        output_extract_data_folder=output_data_folder,
        extract_way=extract_way,
    )
    data_from_gpt = emea_ar_parsing.extract_data(re_run)
    return data_from_gpt


def mapping_data(
    doc_id: str,
    pdf_folder: str,
    output_extract_data_folder: str,
    output_mapping_folder: str,
    extract_way: str = "text",
    re_run_extract_data: bool = False,
    re_run_mapping_data: bool = False,
) -> None:
    logger.info(f"Extract EMEA AR data for doc_id: {doc_id}")
    emea_ar_parsing = EMEA_AR_Parsing(
        doc_id,
        pdf_folder,
        output_extract_data_folder=output_extract_data_folder,
        output_mapping_data_folder=output_mapping_folder,
        extract_way=extract_way,
    )
    doc_data_from_gpt = emea_ar_parsing.extract_data(re_run=re_run_extract_data)
    doc_mapping_data = emea_ar_parsing.mapping_data(
        data_from_gpt=doc_data_from_gpt, re_run=re_run_mapping_data
    )
    return doc_data_from_gpt, doc_mapping_data


def batch_extract_data(
    pdf_folder: str,
    doc_data_excel_file: str = None,
    output_child_folder: str = r"/data/emea_ar/output/extract_data/docs/",
    output_total_folder: str = r"/data/emea_ar/output/extract_data/total/",
    extract_way: str = "text",
    special_doc_id_list: list = None,
    re_run: bool = False,
) -> None:
    pdf_files = glob(pdf_folder + "*.pdf")
    doc_list = []
    if special_doc_id_list is not None and len(special_doc_id_list) > 0:
        doc_list = special_doc_id_list
    if (
        len(doc_list) == 0
        and doc_data_excel_file is not None
        and len(doc_data_excel_file) > 0
        and os.path.exists(doc_data_excel_file)
    ):
        doc_data_df = pd.read_excel(doc_data_excel_file)
        doc_data_df = doc_data_df[doc_data_df["Checked"] == 1]
        doc_list = [str(doc_id) for doc_id in doc_data_df["doc_id"].tolist()]

    result_list = []
    for pdf_file in tqdm(pdf_files):
        pdf_base_name = os.path.basename(pdf_file)
        doc_id = pdf_base_name.split(".")[0]
        if doc_list is not None and doc_id not in doc_list:
            continue
        data_from_gpt = extract_data(
            doc_id=doc_id,
            pdf_folder=pdf_folder,
            output_data_folder=output_child_folder,
            extract_way=extract_way,
            re_run=re_run,
        )
        result_list.extend(data_from_gpt)

    if special_doc_id_list is None or len(special_doc_id_list) == 0:
        result_df = pd.DataFrame(result_list)
        result_df.reset_index(drop=True, inplace=True)

        logger.info(f"Saving the result to {output_total_folder}")
        os.makedirs(output_total_folder, exist_ok=True)
        time_stamp = time.strftime("%Y%m%d%H%M%S", time.localtime())
        output_file = os.path.join(
            output_total_folder,
            f"extract_data_info_{len(pdf_files)}_documents_{time_stamp}.xlsx",
        )
        with pd.ExcelWriter(output_file) as writer:
            result_df.to_excel(writer, index=False, sheet_name="extract_data_info")


def batch_start_job(
    pdf_folder: str,
    doc_data_excel_file: str = None,
    output_extract_data_child_folder: str = r"/data/emea_ar/output/extract_data/docs/",
    output_mapping_child_folder: str = r"/data/emea_ar/output/mapping_data/docs/",
    output_extract_data_total_folder: str = r"/data/emea_ar/output/extract_data/total/",
    output_mapping_total_folder: str = r"/data/emea_ar/output/mapping_data/total/",
    extract_way: str = "text",
    special_doc_id_list: list = None,
    re_run_extract_data: bool = False,
    re_run_mapping_data: bool = False,
    force_save_total_data: bool = False,
    calculate_metrics: bool = False,
):
    pdf_files = glob(pdf_folder + "*.pdf")
    doc_list = []
    for pdf_file in tqdm(pdf_files):
        pdf_base_name = os.path.basename(pdf_file)
        doc_id = pdf_base_name.split(".")[0]
        doc_list.append(doc_id)
        
    if special_doc_id_list is not None and len(special_doc_id_list) > 0:
        doc_list = special_doc_id_list
    if (
        len(doc_list) == 0
        and doc_data_excel_file is not None
        and len(doc_data_excel_file) > 0
        and os.path.exists(doc_data_excel_file)
    ):
        doc_data_df = pd.read_excel(doc_data_excel_file)
        doc_data_df = doc_data_df[doc_data_df["Checked"] == 1]
        doc_list = [str(doc_id) for doc_id in doc_data_df["doc_id"].tolist()]

    result_extract_data_list = []
    result_mapping_data_list = []
    for doc_id in tqdm(doc_list):
        doc_data_from_gpt, doc_mapping_data_list = mapping_data(
            doc_id=doc_id,
            pdf_folder=pdf_folder,
            output_extract_data_folder=output_extract_data_child_folder,
            output_mapping_folder=output_mapping_child_folder,
            extract_way=extract_way,
            re_run_extract_data=re_run_extract_data,
            re_run_mapping_data=re_run_mapping_data,
        )
        result_extract_data_list.extend(doc_data_from_gpt)
        result_mapping_data_list.extend(doc_mapping_data_list)

    if force_save_total_data or (
        special_doc_id_list is None or len(special_doc_id_list) == 0
    ):
        result_extract_data_df = pd.DataFrame(result_extract_data_list)
        result_extract_data_df.reset_index(drop=True, inplace=True)

        result_mappingdata_df = pd.DataFrame(result_mapping_data_list)
        result_mappingdata_df.reset_index(drop=True, inplace=True)
        
        logger.info(f"Saving extract data to {output_extract_data_total_folder}")
        unique_doc_ids = result_extract_data_df["doc_id"].unique().tolist()
        os.makedirs(output_extract_data_total_folder, exist_ok=True)
        time_stamp = time.strftime("%Y%m%d%H%M%S", time.localtime())
        output_file = os.path.join(
            output_extract_data_total_folder,
            f"extract_data_info_{len(unique_doc_ids)}_documents_by_{extract_way}_{time_stamp}.xlsx",
        )
        with pd.ExcelWriter(output_file) as writer:
            result_extract_data_df.to_excel(
                writer, index=False, sheet_name="extract_data_info"
            )

        logger.info(f"Saving mapping data to {output_mapping_total_folder}")
        unique_doc_ids = result_mappingdata_df["doc_id"].unique().tolist()
        os.makedirs(output_mapping_total_folder, exist_ok=True)
        time_stamp = time.strftime("%Y%m%d%H%M%S", time.localtime())
        output_file = os.path.join(
            output_mapping_total_folder,
            f"mapping_data_info_{len(unique_doc_ids)}_documents_by_{extract_way}_{time_stamp}.xlsx",
        )
        
        doc_mapping_data_in_db = only_output_mapping_data_in_db(result_mappingdata_df)
        with pd.ExcelWriter(output_file) as writer:
            doc_mapping_data_in_db.to_excel(
                writer, index=False, sheet_name="data_in_doc_mapping"
            )
            result_mappingdata_df.to_excel(
                writer, index=False, sheet_name="total_mapping_data"
            )
            result_extract_data_df.to_excel(
                writer, index=False, sheet_name="extract_data"
            )


        if calculate_metrics:
            prediction_sheet_name = "total_mapping_data"
            ground_truth_file = r"/data/emea_ar/ground_truth/data_extraction/mapping_data_info_73_documents.xlsx"
            ground_truth_sheet_name = "mapping_data"
            metrics_output_folder = r"/data/emea_ar/output/metrics/"
            
            # logger.info(f"Calculating metrics for data extraction")
            # missing_error_list, metrics_list, metrics_file = get_metrics(
            #     "data_extraction",
            #     output_file,
            #     prediction_sheet_name,
            #     ground_truth_file,
            #     ground_truth_sheet_name,
            #     metrics_output_folder,
            # )

            # logger.info(f"Calculating metrics for investment mapping by actual document mapping")
            # missing_error_list, metrics_list, metrics_file = get_metrics(
            #     "investment_mapping",
            #     output_file,
            #     prediction_sheet_name,
            #     ground_truth_file,
            #     ground_truth_sheet_name,
            #     metrics_output_folder,
            # )
            
            logger.info(f"Calculating metrics for investment mapping by database document mapping")
            missing_error_list, metrics_list, metrics_file = get_metrics(
                "document_mapping_in_db",
                output_file,
                prediction_sheet_name,
                ground_truth_file,
                ground_truth_sheet_name,
                metrics_output_folder,
            )


def only_output_mapping_data_in_db(mapping_data: pd.DataFrame) -> None:
    doc_id_list = mapping_data["doc_id"].unique().tolist()
    data_in_mapping_df_list = []
    for doc_id in doc_id_list:
        doc_mapping_data = mapping_data[mapping_data["doc_id"] == doc_id]
        
        document_mapping = query_document_fund_mapping(doc_id, rerun=False)
        fund_id_list = document_mapping["FundId"].unique().tolist()
        sec_id_list = document_mapping["SecId"].unique().tolist()
        id_list = fund_id_list + sec_id_list
        # filter doc_mapping_data by id_list or empty id
        filter_doc_mapping_data = doc_mapping_data[(doc_mapping_data["investment_id"].isin(id_list)) | (doc_mapping_data["investment_id"] == "")]
        data_in_mapping_df_list.append(filter_doc_mapping_data)
    result_mapping_data_df = pd.concat(data_in_mapping_df_list)
    result_mapping_data_df.reset_index(drop=True, inplace=True)
    
    return result_mapping_data_df


def batch_filter_pdf_files(
    pdf_folder: str,
    doc_data_excel_file: str = None,
    output_folder: str = r"/data/emea_ar/output/filter_pages/",
    special_doc_id_list: list = None,
) -> None:
    pdf_files = glob(pdf_folder + "*.pdf")
    doc_list = []
    if special_doc_id_list is not None and len(special_doc_id_list) > 0:
        doc_list = special_doc_id_list
    if (
        len(doc_list) == 0
        and doc_data_excel_file is not None
        and len(doc_data_excel_file) > 0
        and os.path.exists(doc_data_excel_file)
    ):
        doc_data_df = pd.read_excel(doc_data_excel_file)
        doc_data_df = doc_data_df[doc_data_df["Checked"] == 1]
        doc_list = [str(doc_id) for doc_id in doc_data_df["doc_id"].tolist()]
    result_list = []
    result_details = []
    for pdf_file in tqdm(pdf_files):
        pdf_base_name = os.path.basename(pdf_file)
        doc_id = pdf_base_name.split(".")[0]
        if doc_list is not None and doc_id not in doc_list:
            continue
        doc_datapoint_page_info, doc_result_details = filter_pages(
            doc_id=doc_id, pdf_folder=pdf_folder
        )
        result_list.append(doc_datapoint_page_info)
        result_details.extend(doc_result_details)

    result_df = pd.DataFrame(result_list)
    result_df.reset_index(drop=True, inplace=True)

    result_details_df = pd.DataFrame(result_details)
    result_details_df.reset_index(drop=True, inplace=True)

    logger.info(f"Saving the result to {output_folder}")
    os.makedirs(output_folder, exist_ok=True)
    time_stamp = time.strftime("%Y%m%d%H%M%S", time.localtime())
    output_file = os.path.join(
        output_folder,
        f"datapoint_page_info_{len(result_df)}_documents_{time_stamp}.xlsx",
    )
    with pd.ExcelWriter(output_file) as writer:
        result_df.to_excel(writer, index=False, sheet_name="dp_page_info")
        result_details_df.to_excel(
            writer, index=False, sheet_name="dp_page_info_details"
        )

    if len(special_doc_id_list) == 0:
        logger.info(f"Calculating metrics for {output_file}")
        metrics_output_folder = r"/data/emea_ar/output/metrics/"
        missing_error_list, metrics_list, metrics_file = get_metrics(
            data_type="page_filter",
            prediction_file=output_file,
            prediction_sheet_name="dp_page_info",
            ground_truth_file=doc_data_excel_file,
            output_folder=metrics_output_folder,
        )
        return missing_error_list, metrics_list, metrics_file


def get_metrics(
    data_type: str,
    prediction_file: str,
    prediction_sheet_name: str,
    ground_truth_file: str,
    ground_truth_sheet_name: str = None,
    output_folder: str = None,
) -> None:
    metrics = Metrics(
        data_type=data_type,
        prediction_file=prediction_file,
        prediction_sheet_name=prediction_sheet_name,
        ground_truth_file=ground_truth_file,
        ground_truth_sheet_name=ground_truth_sheet_name,
        output_folder=output_folder,
    )
    missing_error_list, metrics_list, metrics_file = metrics.get_metrics(strict_model=False)
    return missing_error_list, metrics_list, metrics_file


def test_auto_generate_instructions():
    """
    doc_id: str,
    pdf_file: str,
    page_text_dict: dict,
    datapoint_page_info: dict,
    document_mapping_info_df: pd.DataFrame
    """
    doc_id = "402397014"
    pdf_file = f"/data/emea_ar/small_pdf/{doc_id}.pdf"
    document_mapping_info_df = query_document_fund_mapping(doc_id, rerun=False)
    filter_pages = FilterPages(doc_id, pdf_file, document_mapping_info_df)
    page_text_dict = filter_pages.page_text_dict
    datapoint_page_info, datapoint_page_info_details = filter_pages.start_job()
    datapoint_list = list(datapoint_page_info.keys())
    datapoint_list.remove("doc_id")

    data_extraction = DataExtraction(
        doc_id, pdf_file, page_text_dict, datapoint_page_info, document_mapping_info_df
    )
    page_index_list = list(page_text_dict.keys())
    if len(page_index_list) > 0:
        page_text = ""
        for datapoint in datapoint_list:
            if len(datapoint_page_info[datapoint]) > 0:
                page_index_list = datapoint_page_info[datapoint]
                page_text = page_text_dict[page_index_list[0]]
                break

        output_folder = (
            r"/data/emea_ar/basic_information/prompts_example/generate_by_config/"
        )
        os.makedirs(output_folder, exist_ok=True)
        tor_instructions_text = data_extraction.get_instructions_by_datapoints(
            page_text, ["tor"]
        )
        with open(
            os.path.join(output_folder, "tor_instructions.txt"), "w", encoding="utf-8"
        ) as f:
            f.write(tor_instructions_text)

        ter_instructions_text = data_extraction.get_instructions_by_datapoints(
            page_text, ["ter"]
        )
        with open(
            os.path.join(output_folder, "ter_instructions.txt"), "w", encoding="utf-8"
        ) as f:
            f.write(ter_instructions_text)

        ogc_instructions_text = data_extraction.get_instructions_by_datapoints(
            page_text, ["ogc"]
        )
        with open(
            os.path.join(output_folder, "ogc_instructions.txt"), "w", encoding="utf-8"
        ) as f:
            f.write(ogc_instructions_text)

        performance_fee_instructions_text = (
            data_extraction.get_instructions_by_datapoints(
                page_text, ["performance_fee"]
            )
        )
        with open(
            os.path.join(output_folder, "performance_fee_instructions.txt"),
            "w",
            encoding="utf-8",
        ) as f:
            f.write(performance_fee_instructions_text)

        ter_ogc_instructions_text = data_extraction.get_instructions_by_datapoints(
            page_text, ["ter", "ogc"]
        )
        with open(
            os.path.join(output_folder, "ter_ogc_instructions.txt"),
            "w",
            encoding="utf-8",
        ) as f:
            f.write(ter_ogc_instructions_text)

        ter_performance_fee_instructions_text = (
            data_extraction.get_instructions_by_datapoints(
                page_text, ["ter", "performance_fee"]
            )
        )
        with open(
            os.path.join(output_folder, "ter_performance_fee_instructions.txt"),
            "w",
            encoding="utf-8",
        ) as f:
            f.write(ter_performance_fee_instructions_text)

        ogc_ter_performance_fee_instructions_text = (
            data_extraction.get_instructions_by_datapoints(
                page_text, ["ogc", "ter", "performance_fee"]
            )
        )
        with open(
            os.path.join(output_folder, "ogc_ter_performance_fee_instructions.txt"),
            "w",
            encoding="utf-8",
        ) as f:
            f.write(ogc_ter_performance_fee_instructions_text)


def test_data_extraction_metrics():
    data_type = "data_extraction"
    # prediction_file = r"/data/emea_ar/output/mapping_data/total/mapping_data_info_88_documents_by_image_20240920033929.xlsx"
    prediction_file = r"/data/emea_ar/output/mapping_data/total/mapping_data_info_88_documents_by_text_20240922152517.xlsx"
    # prediction_file = r"/data/emea_ar/output/mapping_data/docs/by_text/excel/481475385.xlsx"
    prediction_sheet_name = "mapping_data"
    ground_truth_file = r"/data/emea_ar/ground_truth/data_extraction/mapping_data_info_73_documents.xlsx"
    ground_truth_sheet_name = "mapping_data"
    metrics_output_folder = r"/data/emea_ar/output/metrics/"
    missing_error_list, metrics_list, metrics_file = get_metrics(
        data_type,
        prediction_file,
        prediction_sheet_name,
        ground_truth_file,
        ground_truth_sheet_name,
        metrics_output_folder,
    )


def test_mapping_raw_name():
    doc_id = "337293427"
    raw_name = "KBC BONDS CAPITAL FUND Institutional F Shares"
    raw_share_name = "Institutional F Shares"
    output_folder = r"/data/emea_ar/output/mapping_data/docs/by_text/"
    data_mapping = DataMapping(
        doc_id,
        datapoints=None,
        raw_document_data_list=None,
        document_mapping_info_df=None,
        output_data_folder=output_folder,
    )
    process_cache = {}
    mapping_info = data_mapping.matching_with_database(
        raw_name=raw_name,
        raw_share_name=raw_share_name,
        parent_id="FSGBR0536J", 
        matching_type="share",
        process_cache=process_cache
    )
    print(mapping_info)


if __name__ == "__main__":
    pdf_folder = r"/data/emea_ar/pdf/"
    page_filter_ground_truth_file = (
        r"/data/emea_ar/ground_truth/page_filter/datapoint_page_info_88_documents.xlsx"
    )
    prediction_output_folder = r"/data/emea_ar/output/filter_pages/"
    metrics_output_folder = r"/data/emea_ar/output/metrics/"
    special_doc_id_list = []
    # batch_filter_pdf_files(
    #     pdf_folder, page_filter_ground_truth_file, prediction_output_folder, special_doc_id_list
    # )

    # data_type = "page_filter"
    # prediction_file = r"/data/emea_ar/output/filter_pages/datapoint_page_info_73_documents_20240903145002.xlsx"
    # missing_error_list, metrics_list, metrics_file = get_metrics(
    #     data_type, prediction_file, page_filter_ground_truth_file, metrics_output_folder
    # )

    # test_auto_generate_instructions()

    output_extract_data_child_folder = r"/data/emea_ar/output/extract_data/docs/"
    output_extract_data_total_folder = r"/data/emea_ar/output/extract_data/total/"

    # batch_extract_data(
    #     pdf_folder,
    #     page_filter_ground_truth_file,
    #     output_extract_data_child_folder,
    #     output_extract_data_total_folder,
    #     special_doc_id_list,
    #     re_run,
    # )

    # doc_id = "476492237"
    # extract_way = "image"
    # extract_data(doc_id,
    #              pdf_folder,
    #              output_extract_data_child_folder,
    #              extract_way,
    #              re_run_extract_data)

    # special_doc_id_list = ["505174428", "510326848", "349679479"]
    # check_mapping_doc_id_list = [
    #     "327956364",
    #     "391456740",
    #     "391736837",
    #     "458359181",
    #     "486383912",
    #     "497497599",
    #     "529925114",
    #     "321733631",
    #     "334718372",
    #     "344636875",
    #     "362246081",
    #     "445256897",
    #     "449623976",
    #     "458291624",
    #     "478585901",
    #     "492121213",
    #     "502821436",
    #     "507967525",
    #     "481475385",
    #     "508854243",
    #     "520879048",
    #     "402181770",
    #     "463081566",
    #     "502693599",
    #     "509845549",
    #     "389171486",
    #     "323390570",
    #     "366179419",
    #     "486378555",
    #     "506559375",
    #     "479793787",
    #     "471641628",
    # ]
    # English documents with ground truth
    check_db_mapping_doc_id_list = [
        "292989214",
        "316237292",
        "321733631",
        "323390570",
        "327956364",
        "332223498",
        "333207452",
        "334718372",
        "344636875",
        "362246081",
        "366179419",
        "380945052",
        "382366116",
        "387202452",
        "389171486",
        "391456740",
        "391736837",
        "394778487",
        "401684600",
        "402113224",
        "402181770",
        "402397014",
        "405803396",
        "445102363",
        "445256897",
        "448265376",
        "449555622",
        "449623976",
        "458291624",
        "458359181",
        "463081566",
        "469138353",
        "471641628",
        "476492237",
        "478585901",
        "478586066",
        "479042264",
        "479042269",
        "479793787",
        "481475385",
        "483617247",
        "486378555",
        "486383912",
        "492121213",
        "497497599",
        "502693599"
    ]
    
    # Sample documents with special cases
    # check_db_mapping_doc_id_list = [
    #     "334584772",
    #     "406913630",
    #     "407275419",
    #     "337937633",
    #     "337293427",
    #     "334584772",
    #     "404712928",
    #     "451063582",
    #     "451878128",
    #     "425595958",
    #     "536344026",
    #     "532422548",
    #     "423418540",
    #     "423418395",
    #     "532998065",
    #     "540307575",
    #     "423395975",
    #     "508704368",
    #     "481482392",
    #     "466580448",
    #     "423365707",
    #     "423364758",
    #     "422761666",
    #     "422760156",
    #     "422760148",
    #     "422686965",
    #     "492029971",
    #     "510300817",
    #     "512745032",
    #     "514213638",
    #     "527525440",
    #     "534535767"
    # ]
    # Documents in EMEA Case 1.docx
    check_db_mapping_doc_id_list = [
        "424976833",
        "425480144",
        "427637151",
        "429564034",
        "429950833",
        "430240853",
        "431073795",
        "434710819",
        "434851173",
        "434902020",
        "434924914",
        "435128656",
        "440029306",
        "466371135",
        "466528487",
        "466859621",
        "466860852",
        "467595142",
        "467788879",
        "470515549"
    ]
    
    # documents in New EMEA Documents sample.xlsx as typical documents
    # """
    # Below 9 documents can't get data by keywords or ChatGPT
    # 526747539,
    # 534112077,
    # 535798742,
    # 536299372,
    # 539566148,
    # 541343431,
    # 541923319,
    # 543243585,
    # 543243654
    # """
    check_db_mapping_doc_id_list = [
        "511052670",
        "520733219",
        "524306810",
        "526747539",
        "528783089",
        "532422720",
        "532438210",
        "534112077",
        "534538571",
        "534538682",
        "535798742",
        "536299372",
        "539566148",
        "539604165",
        "540056900",
        "541343431",
        "541669780",
        "541669996",
        "541670397",
        "541923319",
        "542335994",
        "543243585",
        "543243654",
        "543244170",
        "543519140",
        "543519615",
        "543628379",
        "543809340",
        "543944737"
    ]
    # special_doc_id_list = check_mapping_doc_id_list
    special_doc_id_list = check_db_mapping_doc_id_list
    special_doc_id_list = ["536299372"]
    output_mapping_child_folder = r"/data/emea_ar/output/mapping_data/docs/"
    output_mapping_total_folder = r"/data/emea_ar/output/mapping_data/total/"
    re_run_extract_data = False
    re_run_mapping_data = True
    force_save_total_data = False
    calculate_metrics = False

    extract_ways = ["text"]
    # pdf_folder = r"/data/emea_ar/small_pdf/"
    pdf_folder = r"/data/emea_ar/pdf/"
    for extract_way in extract_ways:
        batch_start_job(
            pdf_folder,
            page_filter_ground_truth_file,
            output_extract_data_child_folder,
            output_mapping_child_folder,
            output_extract_data_total_folder,
            output_mapping_total_folder,
            extract_way,
            special_doc_id_list,
            re_run_extract_data,
            re_run_mapping_data,
            force_save_total_data=force_save_total_data,
            calculate_metrics=calculate_metrics,
        )

    # test_data_extraction_metrics()
    # test_mapping_raw_name()